2024

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Vancomycin-resistant Staphylococcus aureus (VRSA) can overcome the cost ​of antibiotic resistance and may threaten vancomycin’s clinical ​durability.Samuel E Blechman, Erik S Wright, PLOS Pathogens, 2024. ​https://doi.org/10.1371/journal.ppat.1012422

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2024

Applications of ​Machine Learning ​on Electronic ​Health Record Data ​to Combat ​Antibiotic ​Resistance, Samuel ​E Blechman, Erik S ​Wright, The Journal ​of Infectious ​Diseases, 2024. ​https://doi.org/10.1​093/infdis/jiae348

2023

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Evaluating the long-term portrayal of antibiotic resistance in major US newspapers

A Way, M Bond, B Nanna, ES Wright

BMC Public Health 23 (1), 1343, 2023


2022

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Balancing trade-offs imposed by growth media and mass spectrometry for bacterial exometabolomics

AE Donnelly, N Narayanan, CMC Birer-Williams, TJ DeWolfe, RK Chu, CR Anderton, ES Wright

Applied and Environmental Microbiology 88 (20), e00922-22, 2022

Sample-efficient identification of high-dimensional antibiotic synergy with a normalized diagonal sampling design

J Brennan, L Jain, S Garman, AE Donnelly, ES Wright, K Jamieson

PLOS Computational Biology 18 (7), e1010311, 2022

2021

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Accurate annotation of protein coding sequences with IDTAXA

NP Cooley, ES Wright

NAR Genomics and Bioinformatics 3 (3), lqab080, 2021

SubTap, a versatile 3D printed platform for eavesdropping on extracellular interactions

CMC Birer-Williams, RK Chu, CR Anderton, ES Wright

Msystems 6 (4), 10.1128/msystems. 00902-21, 2021

Parallel evolution between genomic segments of seasonal human influenza viruses reveals RNA-RNA relationships

JE Jones, V Le Sage, GH Padovani, M Calderon, ES Wright, S Lakdawala

eLife, 2021

2021

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Multi-stable bacterial communities exhibit extreme sensitivity to initial conditions

ES Wright, R Gupta, KH Vetsigian

FEMS Microbiology Ecology 97 (6), fiab073, 2021

Ten simple rules for hitting a home run with your elevator pitch

WR Morgan, ES Wright

PLoS Computational Biology 17 (3), e1008756, 2021

Discordance among antibiotic prescription guidelines reflects a lack of clear best practices

LM Rost, MH Nguyen, CJ Clancy, RK Shields, ES Wright

Open forum infectious diseases 8 (1), ofaa571, 2021

2020

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SARS-CoV-2 genome evolution exposes early human adaptations

ES Wright, SS Lakdawala, VS Cooper

bioRxiv, 2020.05. 26.117069, 2020

AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions

DR Korandla, JM Wozniak, A Campeau, DJ Gonzalez, ES Wright

Bioinformatics 36 (4), 1022-1029, 2020

2019

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Capturing the complex interplay between drugs and the intestinal microbiome

C Birer, ES Wright

Clinical pharmacology and therapeutics 106 (3), 501, 2019

2017

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Getting my feet wet

ES Wright

Science 356 (6333), 106-106, 2017

2016

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Quality filtering of Illumina index reads mitigates sample cross-talk

ES Wright, KH Vetsigian

BMC genomics 17, 1-7, 2016

DesignSignatures: a tool for designing primers that yields amplicons with distinct signatures

ES Wright, KH Vetsigian

Bioinformatics 32 (10), 1565-1567, 2016

Inhibitory interactions promote frequent bistability among competing bacteria

ES Wright, KH Vetsigian

Nature communications 7 (1), 11274, 2016

Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R

ES Wright

The R Journal 8 (1), 352-359, 2016

2014

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Mathematical tools to optimize the design of oligonucleotide probes and primers

DR Noguera, ES Wright, P Camejo, LS Yilmaz

Applied microbiology and biotechnology 98, 9595-9608, 2014

Automated Design of Probes for rRNA-Targeted Fluorescence In Situ Hybridization Reveals the Advantages of Using Dual Probes for Accurate Identification

ES Wright, LS Yilmaz, AM Corcoran, HE Ökten, DR Noguera

Applied and environmental microbiology 80 (16), 5124-5133, 2014

Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates

ES Wright, LS Yilmaz, S Ram, JM Gasser, GW Harrington, DR Noguera

Environmental microbiology 16 (5), 1354-1365, 2014

2013

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Identification of Bacterial and Archaeal Communities From Source to Tap

ES Wright, JM Strait, LS Yilmaz, GW Harrington, DR Noguera

Water Research Foundation, 2013

2012

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Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics

LS Yilmaz, A Loy, ES Wright, M Wagner, DR Noguera

Public Library of Science 7 (8), e43862, 2012

DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences

ES Wright, LS Yilmaz, DR Noguera

Applied and environmental microbiology 78 (3), 717-725, 2012

Contact Us

eswright@pitt.edu

437 Bridgeside Point II

450 Technology Drive

Pittsburgh, PA 15219

Department of Biomedical Informatics

University of Pittsburgh, School of Medicine

dbmi.pitt.edu